LOCUS       NC_029260               2571 bp    DNA     linear   CON 07-AUG-2018
DEFINITION  Oryza sativa Japonica Group cultivar Nipponbare chromosome 5,
            IRGSP-1.0.
ACCESSION   NC_029260 REGION: complement(24067696..24070266)
VERSION     NC_029260.1
DBLINK      BioProject: PRJNA122
            BioSample: SAMD00000397
            Assembly: GCF_001433935.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Kawahara,Y., de la Bastide,M., Hamilton,J.P., Kanamori,H.,
            McCombie,W.R., Ouyang,S., Schwartz,D.C., Tanaka,T., Wu,J., Zhou,S.,
            Childs,K.L., Davidson,R.M., Lin,H., Quesada-Ocampo,L.,
            Vaillancourt,B., Sakai,H., Lee,S.S., Kim,J., Numa,H., Itoh,T.,
            Buell,C.R. and Matsumoto,T.
  TITLE     Improvement of the Oryza sativa Nipponbare reference genome using
            next generation sequence and optical map data
  JOURNAL   Rice (N Y) 6 (1), 4 (2013)
   PUBMED   24280374
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AP014961.1.
            Assembly name: IRGSP-1.0
            The genomic sequence for this RefSeq record is from the
            whole-genome assembly released by the National Institute of
            Agrobiological Sciences on 2015/10/10.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="genomic DNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="5"
     gene            1..2571
                     /gene="LOC4339159"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon."
                     /db_xref="GeneID:4339159"
     misc_RNA        join(1..246,371..396,515..542,1081..1214,1309..1383,
                     1801..1896,2254..2571)
                     /gene="LOC4339159"
                     /product="histone H3-1, transcript variant X3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 39 samples with support for all annotated
                     introns"
                     /transcript_id="XR_001545891.2"
                     /db_xref="GeneID:4339159"
     mRNA            join(10..246,371..396,515..542,1081..1214,1309..1383,
                     1821..1896,2254..2571)
                     /gene="LOC4339159"
                     /product="histone H3-1, transcript variant X1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 ESTs, 22 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 59 samples with support for all
                     annotated introns"
                     /transcript_id="XM_015783251.2"
                     /db_xref="GeneID:4339159"
     mRNA            join(11..246,371..396,515..542,1084..1214,1309..1383,
                     1821..1896,2254..2571)
                     /gene="LOC4339159"
                     /product="histone H3-1, transcript variant X2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 7 ESTs, 23 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 59 samples with support for all
                     annotated introns"
                     /transcript_id="XM_015783252.2"
                     /db_xref="GeneID:4339159"
     CDS             join(141..246,371..396,515..542,1084..1214,1309..1383,
                     1821..1896,2254..2306)
                     /gene="LOC4339159"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon."
                     /codon_start=1
                     /product="histone H3-1 isoform X2"
                     /protein_id="XP_015638738.1"
                     /db_xref="GeneID:4339159"
                     /translation="MARTKHPAVRKSKAEPKKKLQFERSPRPSKAQRAGGGTGTSATT
                     RSAAGTSASGTPRQQTKQRKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREIT
                     DFYSKDVSRWTLEALLALQEAAEYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGG
                     RRPW"
     CDS             join(141..246,371..396,515..542,1081..1214,1309..1383,
                     1821..1896,2254..2306)
                     /gene="LOC4339159"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon."
                     /codon_start=1
                     /product="histone H3-5 isoform X1"
                     /protein_id="XP_015638737.1"
                     /db_xref="GeneID:4339159"
                     /translation="MARTKHPAVRKSKAEPKKKLQFERSPRPSKAQRAGGGTGTSATT
                     RSAAGTSASAGTPRQQTKQRKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVREI
                     TDFYSKDVSRWTLEALLALQEAAEYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIG
                     GRRPW"
ORIGIN      
        1 caaaaccaag ggcctaaccg caaaaaggga tccccaaccc aaaaccaaaa gaaaccctct
       61 cccgtttgcc tccacgccgc ttcagtttga aaacccaccg ccacgtcgcc gccgccgccg
      121 ccgccgccgc cgacgccgag atggctcgca cgaagcaccc ggcggtgagg aagtcgaagg
      181 cggagcccaa gaagaagctc cagttcgaac gctcccctcg gccgtcgaag gcgcagcgcg
      241 ctggtggtga gcgcgcgctc tctccccctc tgcgtttctt tttttttttc ctttttcttt
      301 caatggcggt ggatggtgaa gcttatgccc cccccccccc cttcccgcct cttgcttgtc
      361 ccctttgcag gcggcacggg tacctcggcg accacggtgc gtgcgggagc gggtctttcg
      421 tttggtgatt ttttgatttt gtggggggat atgtttttgt tttgtatctt ggctggatgg
      481 atggcttgct caccacctgt ttgatggaat gcagaggagc gcggctggaa catcggcttc
      541 aggtgcgttc tcttgggggg gtttctaggg ttattcatgg gctcgttgga gcttttcctt
      601 tctgtctctt ggattccggg ggacctgagg ggctcaatgt gtcccttttc ttgctctgtt
      661 ttaccgtgtg ctgtactttc ctcatcgttg ttttctgaat atattataag aacagtagtt
      721 gcagaaagat cttcaattgc tcatcagtca aagcttttct tgttttcatt ctgaaataat
      781 agcaaatcca gtttggtcca tggaggggtt atctgaaaca ttatgaccat aaaacatggt
      841 attaagcatt gctagccaag aaatgtgtgg tttttagaca cgatgttgat aggtgatttt
      901 tatgctcatc cattattagt ctttgcatcg tgggaactga tttagtaaac tttctttagt
      961 gtcatggttc aaatagcgtc tgttctacct agatgatagg tatccatatg gaagtcttgg
     1021 ctttggaatt gctctccttt tgttctcctg tgattaaata actttaacat gtgtgtgaag
     1081 cagggacgcc taggcagcaa acgaagcaga ggaagccaca ccgcttccgt ccaggcacag
     1141 tggcactgcg ggagatcagg aaatttcaga aaaccaccga actgctgatc ccgtttgcac
     1201 cattttctcg gctggtgggt acatcctgaa cctgccttct ctctatatca aatatttcgt
     1261 agtgcaaact tgtgtgatgg aagctttttg tgccgataaa atttgcaggt cagggagatc
     1321 actgatttct attcaaagga tgtgtcacgg tggacccttg aagctctcct tgcattgcaa
     1381 gaggtcagtg gtcaaacctg tttattataa gtttacaact gatggcttag ttagggaagg
     1441 gtcagactga attatactgt ttaaattcca ttctgcttca agactcaagt cacggctcaa
     1501 gagtgtaact gaaaaatgta caaatcttcc atgatcaata aaatgaatat ctctgtgtgt
     1561 tgatttatga gtcagattgc taaattatta tcctttttca gtagaacacc tatatactac
     1621 aaatatgcaa cctccctatt ttgttgtgtc tgttcaagat tgctatcata gagtatacca
     1681 atttcagttc cttctttcca gccatgtctg tttctgcata accaggaaaa ggaacaaaga
     1741 gctgacttaa ttctcacaaa ataaattatg ttatttactt gctgtcctgc aaatttccag
     1801 tggttttccc tctcctgcag gcagcagaat accacttagt ggacatattt gaagtgtcaa
     1861 atctctgcgc catccatgct aagcgtgtta ccatcagtaa gttgtcattc tgaatgaact
     1921 tttctctttc tttttctccc tttatattat tatgctaaat ggatatcata tatgccacag
     1981 cctacatgat atcatatacg catccacttc aaaagcattc tattttttta taggaataac
     2041 attctaattg caggatgatt cttaatacat gtgtttatat ttaatgtcat atctagtttt
     2101 catactctta aatttatcat gattattgat taaacatagg gagaattagt tggtttgtga
     2161 gttttgaggt gtgaaatatg ctgcttgcta ttccctgtaa agcttatcag cgttgtcatt
     2221 gtgtggttta acaaataaac gtttgttctg cagtgcaaaa ggacatgcaa cttgccaggc
     2281 gtatcggtgg gcggaggcca tggtgaaaat ttgtttgcga gccatgcagc atgatggaca
     2341 aggagcaaca tgtgtcgttg attaacattt tagaaagtag tgtagatgta tcttcacata
     2401 gggatcaact tacccttcgt tcccattcta attcagttga tgttagtatt taccttttgc
     2461 tccatttgga ttggtcgaat tcaggatttc atcaaacagt cgattgtgaa atgtgaacca
     2521 ggaattgttg tgttgattgc aataatgggt tcctctcacc tgcttcttcc a
//

