Zhang Tao lab

Bioinformatics, Epigenetics and Genomics.

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Chorus2 oligo datasets

Chorus2 oligo datasets

Oligo datasets which host oligo sequences for Oligo-FISH. Details Introduction The oligo datasets currently host oligo sequences of nine species, including Arabidopsis, rice, maize, potato, barley, soybean, human, mouse and...

PlantDHS

PlantDHS

PlantDHS: a database for DNase I hypersensitive sites (DHSs) in plants.

CAPE

CAPE

CAPE: An efficient CRISPR-Cas12a promoter editing system for crop improvement [JBrowse preview](https://bioinfor.yzu.edu.cn/jbrowse2/cape) ## Introduction we demonstrate a **CAPE** based promoter editing and tuning pipeline for efficient production of useful quantitative...

CAPE

CAPE

CAPE: An efficient CRISPR-Cas12a promoter editing system for crop improvement JBrowse preview Introduction we demonstrate a CAPE based promoter editing and tuning pipeline for efficient production of useful quantitative trait...


Lab meeting

Genome-wide cis-decoding for expression design in tomato using cistrome data and explainable deep learning

Genome-wide cis-decoding for expression design in tomato using cistrome data and explainable deep learning

Abstract: In the evolutionary history of plants, variation in cis-regulatory elements (CREs) resulting in diversification of gene expression has played a central role in driving the evolution of lineage-specific traits....

Liu Guanqing
OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice

OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice

Abstract: Grains from cereals contribute an important source of protein to human food, and grain protein content (GPC) is an important determinant of nutritional quality in cereals. Here we show...

Tan Yan
H1 linker histones silence repetitive elements by promoting both histone H3K9 methylation and chromatin compaction

H1 linker histones silence repetitive elements by promoting both histone H3K9 methylation and chromatin compaction

Abstract: Nearly 50% of mouse and human genomes are composed of repetitive sequences. Transcription of these sequences is tightly controlled during development to prevent genomic instability, inappropriate gene activation and...

Pan Kairui
Splicing-mediated activation of SHAGGY-like kinases underpinning carbon partitioning in Arabidopsis seeds

Splicing-mediated activation of SHAGGY-like kinases underpinning carbon partitioning in Arabidopsis seeds

Abstract: Glycogen synthase kinase 3 (GSK3) family members serve as signaling hubs for plant development and stress responses, yet the underlying mechanism of their transcriptional regulation remains a long-standing mystery....

Zhang Xin